Defining the phylogenetic position of Amanita species from Andean Colombia.
Identifieur interne : 000E02 ( Main/Exploration ); précédent : 000E01; suivant : 000E03Defining the phylogenetic position of Amanita species from Andean Colombia.
Auteurs : Natalia Vargas [Colombie] ; Carlos José Pardo-De La Hoz [Colombie] ; Giovanna Danies [Colombie] ; Ana Esperanza Franco-Molano [Colombie] ; Pedro Jiménez [Colombie] ; Silvia Restrepo [Colombie] ; Alejandro Grajales [Colombie]Source :
- Mycologia [ 0027-5514 ] ; 2017.
Descripteurs français
- KwdFr :
- ADN fongique (génétique), ADN ribosomique (génétique), Amanita (classification), Amanita (isolement et purification), Biodiversité (MeSH), Colombie (MeSH), Espaceur de l'ADN ribosomique (génétique), Facteur-1 d'élongation de la chaîne peptidique (génétique), Mycorhizes (classification), Mycorhizes (isolement et purification), Phylogenèse (MeSH), Pinus (microbiologie), Quercus (microbiologie), Techniques de typage mycologique (MeSH).
- MESH :
- génétique : ADN fongique, ADN ribosomique, Amanita, Espaceur de l'ADN ribosomique, Facteur-1 d'élongation de la chaîne peptidique, Mycorhizes.
- isolement et purification : Amanita, Mycorhizes.
- microbiologie : Pinus, Quercus.
- Biodiversité, Colombie, Phylogenèse, Techniques de typage mycologique.
English descriptors
- KwdEn :
- Amanita (classification), Amanita (isolation & purification), Biodiversity (MeSH), Colombia (MeSH), DNA, Fungal (genetics), DNA, Ribosomal (genetics), DNA, Ribosomal Spacer (genetics), Mycological Typing Techniques (MeSH), Mycorrhizae (classification), Mycorrhizae (isolation & purification), Peptide Elongation Factor 1 (genetics), Phylogeny (MeSH), Pinus (microbiology), Quercus (microbiology).
- MESH :
- chemical , genetics : DNA, Fungal, DNA, Ribosomal, DNA, Ribosomal Spacer, Peptide Elongation Factor 1.
- classification : Amanita, Mycorrhizae.
- isolation & purification : Amanita, Mycorrhizae.
- microbiology : Pinus, Quercus.
- Biodiversity, Colombia, Mycological Typing Techniques, Phylogeny.
Abstract
Amanita is a worldwide-distributed fungal genus, with approximately 600 known species. Most species within the genus are ectomycorrhizal (ECM), with some saprotrophic representatives. In this study, we constructed the first comprehensive phylogeny including ECM species from Colombia collected in native Quercus humboldtii forests and in introduced Pinus patula plantations. We included 8 species (A. brunneolocularis, A. colombiana, A. flavoconia, A. fuligineodisca, A. muscaria, A. rubescens, A. sororcula, and A. xylinivolva) out of 16 species reported for the country, two new reports: A. citrina and A. virosa, and a new variety A. brunneolocularis var. pallida. Morphological taxonomic keys together with a phylogenetic approach using three nuclear gene regions: partial nuc rDNA 28S nuc rDNA internal transcribed spacers ITS1 and ITS2 and partial translation elongation factor 1-α gene (TEF1), were used to classify the specimens. Several highly supported clades were obtained from the phylogenetic hypotheses obtained by Bayesian inference and maximum likelihood approaches, allowing us to position the Colombian collections in a coherent infrageneric level and to contribute to the knowledge of local Amanita diversity.
DOI: 10.1080/00275514.2017.1309631
PubMed: 28509612
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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sort="Danies, Giovanna" uniqKey="Danies G" first="Giovanna" last="Danies">Giovanna Danies</name><affiliation wicri:level="1"><nlm:affiliation>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá , Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá </wicri:regionArea><wicri:noRegion>Bogotá </wicri:noRegion></affiliation></author><author><name sortKey="Franco Molano, Ana Esperanza" sort="Franco Molano, Ana Esperanza" uniqKey="Franco Molano A" first="Ana Esperanza" last="Franco-Molano">Ana Esperanza Franco-Molano</name><affiliation wicri:level="1"><nlm:affiliation>b Laboratorio de Taxonomía y Ecología de Hongos , Universidad de Antioquia , Medellín , Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>b Laboratorio de Taxonomía y Ecología de Hongos , Universidad de Antioquia , Medellín </wicri:regionArea><wicri:noRegion>Medellín </wicri:noRegion></affiliation></author><author><name sortKey="Jimenez, Pedro" sort="Jimenez, Pedro" uniqKey="Jimenez P" first="Pedro" last="Jiménez">Pedro Jiménez</name><affiliation wicri:level="1"><nlm:affiliation>c Laboratorio de Fitopatología , Universidad Militar Nueva Granada , Bogotá , Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>c Laboratorio de Fitopatología , Universidad Militar Nueva Granada , Bogotá </wicri:regionArea><wicri:noRegion>Bogotá </wicri:noRegion></affiliation></author><author><name sortKey="Restrepo, Silvia" sort="Restrepo, Silvia" uniqKey="Restrepo S" first="Silvia" last="Restrepo">Silvia Restrepo</name><affiliation wicri:level="1"><nlm:affiliation>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá , Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>a Laboratorio de Micología y 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(classification)</term><term>Amanita (isolation & purification)</term><term>Biodiversity (MeSH)</term><term>Colombia (MeSH)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal (genetics)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Mycological Typing Techniques (MeSH)</term><term>Mycorrhizae (classification)</term><term>Mycorrhizae (isolation & purification)</term><term>Peptide Elongation Factor 1 (genetics)</term><term>Phylogeny (MeSH)</term><term>Pinus (microbiology)</term><term>Quercus (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (génétique)</term><term>ADN ribosomique (génétique)</term><term>Amanita (classification)</term><term>Amanita (isolement et purification)</term><term>Biodiversité (MeSH)</term><term>Colombie (MeSH)</term><term>Espaceur de l'ADN ribosomique (génétique)</term><term>Facteur-1 d'élongation de la chaîne peptidique (génétique)</term><term>Mycorhizes (classification)</term><term>Mycorhizes (isolement et purification)</term><term>Phylogenèse (MeSH)</term><term>Pinus (microbiologie)</term><term>Quercus (microbiologie)</term><term>Techniques de typage mycologique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal</term><term>DNA, Ribosomal Spacer</term><term>Peptide Elongation Factor 1</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Amanita</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term><term>ADN ribosomique</term><term>Amanita</term><term>Espaceur de l'ADN ribosomique</term><term>Facteur-1 d'élongation de la chaîne peptidique</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Amanita</term><term>Mycorrhizae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Amanita</term><term>Mycorhizes</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Pinus</term><term>Quercus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Pinus</term><term>Quercus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Colombia</term><term>Mycological Typing Techniques</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Biodiversité</term><term>Colombie</term><term>Phylogenèse</term><term>Techniques de typage mycologique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Amanita is a worldwide-distributed fungal genus, with approximately 600 known species. Most species within the genus are ectomycorrhizal (ECM), with some saprotrophic representatives. In this study, we constructed the first comprehensive phylogeny including ECM species from Colombia collected in native Quercus humboldtii forests and in introduced Pinus patula plantations. We included 8 species (A. brunneolocularis, A. colombiana, A. flavoconia, A. fuligineodisca, A. muscaria, A. rubescens, A. sororcula, and A. xylinivolva) out of 16 species reported for the country, two new reports: A. citrina and A. virosa, and a new variety A. brunneolocularis var. pallida. Morphological taxonomic keys together with a phylogenetic approach using three nuclear gene regions: partial nuc rDNA 28S nuc rDNA internal transcribed spacers ITS1 and ITS2 and partial translation elongation factor 1-α gene (TEF1), were used to classify the specimens. Several highly supported clades were obtained from the phylogenetic hypotheses obtained by Bayesian inference and maximum likelihood approaches, allowing us to position the Colombian collections in a coherent infrageneric level and to contribute to the knowledge of local Amanita diversity.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28509612</PMID><DateCompleted><Year>2018</Year><Month>10</Month><Day>26</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>06</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>109</Volume><Issue>2</Issue><PubDate><Year>2017</Year></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Defining the phylogenetic position of Amanita species from Andean Colombia.</ArticleTitle><Pagination><MedlinePgn>261-276</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1080/00275514.2017.1309631</ELocationID><Abstract><AbstractText>Amanita is a worldwide-distributed fungal genus, with approximately 600 known species. Most species within the genus are ectomycorrhizal (ECM), with some saprotrophic representatives. In this study, we constructed the first comprehensive phylogeny including ECM species from Colombia collected in native Quercus humboldtii forests and in introduced Pinus patula plantations. We included 8 species (A. brunneolocularis, A. colombiana, A. flavoconia, A. fuligineodisca, A. muscaria, A. rubescens, A. sororcula, and A. xylinivolva) out of 16 species reported for the country, two new reports: A. citrina and A. virosa, and a new variety A. brunneolocularis var. pallida. Morphological taxonomic keys together with a phylogenetic approach using three nuclear gene regions: partial nuc rDNA 28S nuc rDNA internal transcribed spacers ITS1 and ITS2 and partial translation elongation factor 1-α gene (TEF1), were used to classify the specimens. Several highly supported clades were obtained from the phylogenetic hypotheses obtained by Bayesian inference and maximum likelihood approaches, allowing us to position the Colombian collections in a coherent infrageneric level and to contribute to the knowledge of local Amanita diversity.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vargas</LastName><ForeName>Natalia</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá , Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pardo-de La Hoz</LastName><ForeName>Carlos José</ForeName><Initials>CJ</Initials><Identifier Source="ORCID">0000-0002-7898-0948</Identifier><AffiliationInfo><Affiliation>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá , Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Danies</LastName><ForeName>Giovanna</ForeName><Initials>G</Initials><Identifier Source="ORCID">0000-0001-9689-1140</Identifier><AffiliationInfo><Affiliation>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá , Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Franco-Molano</LastName><ForeName>Ana Esperanza</ForeName><Initials>AE</Initials><AffiliationInfo><Affiliation>b Laboratorio de Taxonomía y Ecología de Hongos , Universidad de Antioquia , Medellín , Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiménez</LastName><ForeName>Pedro</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>c Laboratorio de Fitopatología , Universidad Militar Nueva Granada , Bogotá , Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Restrepo</LastName><ForeName>Silvia</ForeName><Initials>S</Initials><Identifier Source="ORCID">0000-0001-9016-1040</Identifier><AffiliationInfo><Affiliation>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá , Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grajales</LastName><ForeName>Alejandro</ForeName><Initials>A</Initials><Identifier Source="ORCID">0000-0003-3984-3323</Identifier><AffiliationInfo><Affiliation>a Laboratorio de Micología y Fitopatología , Universidad de Los Andes , Carrera 1A #18A-12, Bogotá , Colombia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>04</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D020648">Peptide Elongation Factor 1</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000545" MajorTopicYN="N">Amanita</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D044822" MajorTopicYN="N">Biodiversity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003105" MajorTopicYN="N">Colombia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016533" MajorTopicYN="N">Mycological Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="N">Mycorrhizae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020648" MajorTopicYN="N">Peptide Elongation Factor 1</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D028223" MajorTopicYN="N">Pinus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029963" MajorTopicYN="N">Quercus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Acrophysalids</Keyword><Keyword MajorTopicYN="Y">Amanita</Keyword><Keyword MajorTopicYN="Y">infrageneric classification</Keyword><Keyword MajorTopicYN="Y">molecular systematics</Keyword><Keyword MajorTopicYN="Y">rDNA</Keyword><Keyword MajorTopicYN="Y">translation elongation factor 1-α gene</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>5</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>10</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>5</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28509612</ArticleId><ArticleId IdType="doi">10.1080/00275514.2017.1309631</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Colombie</li></country></list><tree><country name="Colombie"><noRegion><name sortKey="Vargas, Natalia" sort="Vargas, Natalia" uniqKey="Vargas N" first="Natalia" last="Vargas">Natalia Vargas</name></noRegion><name sortKey="Danies, Giovanna" sort="Danies, Giovanna" uniqKey="Danies G" first="Giovanna" last="Danies">Giovanna Danies</name><name sortKey="Franco Molano, Ana Esperanza" sort="Franco Molano, Ana Esperanza" uniqKey="Franco Molano A" first="Ana Esperanza" last="Franco-Molano">Ana Esperanza Franco-Molano</name><name sortKey="Grajales, Alejandro" sort="Grajales, Alejandro" uniqKey="Grajales A" first="Alejandro" last="Grajales">Alejandro Grajales</name><name sortKey="Jimenez, Pedro" sort="Jimenez, Pedro" uniqKey="Jimenez P" first="Pedro" last="Jiménez">Pedro Jiménez</name><name sortKey="Pardo De La Hoz, Carlos Jose" sort="Pardo De La Hoz, Carlos Jose" uniqKey="Pardo De La Hoz C" first="Carlos José" last="Pardo-De La Hoz">Carlos José Pardo-De La Hoz</name><name sortKey="Restrepo, Silvia" sort="Restrepo, Silvia" uniqKey="Restrepo S" first="Silvia" last="Restrepo">Silvia Restrepo</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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